Module:Taxonbar - Revision history

Jts1882: db ids use lowercase

2024-11-23T13:35:41Z

db ids use lowercase

← Previous revision		Revision as of 13:35, 23 November 2024
Line 80:		Line 80:
	if db == 'bow' then -- for birds of world which uses eBird identifier		if db == 'bow' then -- for birds of world which uses eBird identifier
	link = 'https://birdsoftheworld.org/bow/species/$1'		link = 'https://birdsoftheworld.org/bow/species/$1'
	elseif db == '~~SpeciesFungorum~~' then -- SpeciesFungorum uses Index Fungorum identifier		elseif db == 'speciesfungorum' then -- SpeciesFungorum uses Index Fungorum identifier
	link = 'https://www.speciesfungorum.org/Names/NamesRecord.asp?RecordID=$1'		link = 'https://www.speciesfungorum.org/Names/NamesRecord.asp?RecordID=$1'
	elseif db == 'fossilworks' then		elseif db == 'fossilworks' then

Jts1882: Add Species Fungorum using Index Fungorum indentifier

2024-11-23T09:22:54Z

Add Species Fungorum using Index Fungorum indentifier

← Previous revision		Revision as of 09:22, 23 November 2024
Line 80:		Line 80:
	if db == 'bow' then -- for birds of world which uses eBird identifier		if db == 'bow' then -- for birds of world which uses eBird identifier
	link = 'https://birdsoftheworld.org/bow/species/$1'		link = 'https://birdsoftheworld.org/bow/species/$1'
			elseif db == 'SpeciesFungorum' then -- SpeciesFungorum uses Index Fungorum identifier
			link = 'https://www.speciesfungorum.org/Names/NamesRecord.asp?RecordID=$1'
	elseif db == 'fossilworks' then		elseif db == 'fossilworks' then
	link = 'https://paleobiodb.org/classic/basicTaxonInfo?taxon_no=$1'		link = 'https://paleobiodb.org/classic/basicTaxonInfo?taxon_no=$1'

Hike395: protect against null datavalue

2024-09-21T14:24:16Z

protect against null datavalue

← Previous revision		Revision as of 14:24, 21 September 2024
Line 336:		Line 336:
	local currentBasState = currentItem:getBestStatements('P566')[1] --basionym		local currentBasState = currentItem:getBestStatements('P566')[1] --basionym
	if currentBasState then		if currentBasState then
	local ~~basionymId~~ = currentBasState.mainsnak.datavalue~~.value.id~~		local datavalue = currentBasState.mainsnak.datavalue
			local basionymId = datavalue and datavalue.value.id
	if basionymId and resolveEntity._id(basionymId) and tFroms[basionymId] == nil then		if basionymId and resolveEntity._id(basionymId) and tFroms[basionymId] == nil then
	--check that basionym is a strict instance of taxon		--check that basionym is a strict instance of taxon

Ahecht: Allow module to be directly called from articles with a large WP:PEIS

2024-05-02T17:53:39Z

Allow module to be directly called from articles with a large WP:PEIS

← Previous revision		Revision as of 17:53, 2 May 2024
Line 685:		Line 685:
	return outString..errors		return outString..errors
	end		end

			function p.taxonbar(frame) return p.authorityControlTaxon( frame:newChild{title = frame:getTitle()} ) end

	return p		return p

Jts1882: fossilworks is dead; use its identifier to link to PBDB (tested in sandbox; see template talk page)

2024-04-01T08:12:35Z

fossilworks is dead; use its identifier to link to PBDB (tested in sandbox; see template talk page)

← Previous revision		Revision as of 08:12, 1 April 2024
Line 80:		Line 80:
	if db == 'bow' then -- for birds of world which uses eBird identifier		if db == 'bow' then -- for birds of world which uses eBird identifier
	link = 'https://birdsoftheworld.org/bow/species/$1'		link = 'https://birdsoftheworld.org/bow/species/$1'
			elseif db == 'fossilworks' then
			link = 'https://paleobiodb.org/classic/basicTaxonInfo?taxon_no=$1'
	end		end
	elseif dataType == 'url' then		elseif dataType == 'url' then
Line 568:		Line 570:
	if propId > 0 then --link		if propId > 0 then --link
	table.insert( elements, createRow( params[1], params[2]..':', val, getLink( propId, params[1], val ).text, true ) )		table.insert( elements, createRow( params[1], params[2]..':', val, getLink( propId, params[1], val ).text, true ) )
			if params[1] == 'fossilworks' then -- fossilworks being use to link to PBDB
			if (elements[#elements] == elements[#elements-1]) then -- check if identical PBDB entry already set
			--mw.addWarning("item has both Fossilworks and PBDB identifers:" .. val)
			elements[#elements] = nil
			end
			end
	else --propId == 0; no link		else --propId == 0; no link
	table.insert( elements, createRow( params[1], params[2]..':', val, val, true ) )		table.insert( elements, createRow( params[1], params[2]..':', val, val, true ) )

Tom.Reding: Show title & taxon for 1-row taxonbars, per talk; reindex ttrackingcats{}; from sandbox

2024-03-08T20:46:03Z

Show title & taxon for 1-row taxonbars, per talk; reindex ttrackingcats{}; from sandbox

Tom.Reding: Category:Taxonbars with automatically added monotypic species & Category:Taxonbars of monotypic genera missing species created & populated via d:Property:P427! per talk; from sandbox & Aaata

2024-02-06T17:42:25Z

Category:Taxonbars with automatically added monotypic species & Category:Taxonbars of monotypic genera missing species created & populated via d:Property:P427! per talk; from sandbox & Aaata

@@ Line 193: / Line 193: @@
 		'', --[25] placeholder for [[Category:Taxonbars with 40–44 taxon IDs]]
 		'', --[26] placeholder for [[Category:Taxonbars with 45+ taxon IDs]]
+	}
 	local acceptableInstanceOf_Strict = whitelist{ args = { 'strict' } }
@@ Line 380: / Line 382: @@
 			local parentTaxonRank = nil
 			local parentMonoGenus = nil --holy grail/tbd
 			local instanceOf = instanceOfState.mainsnak.datavalue.value.id
 			if instanceOf and (instanceOf == 'Q310890' or instanceOf == 'Q47487597') then --monotypic/fossil taxon
@@ Line 413: / Line 419: @@
 									tCats[17] = '[[Category:Taxonbars with automatically added monotypic genera]]'
 									break
-								end
+					end	end	end	end
 					if parentMonoGenus == nil or tFroms[parentMonoGenus] == nil then
 						tCats[18] = '[[Category:Taxonbars of monotypic species missing genera]]'
 						break
 					end
 				elseif taxonRank and taxonRank == 'Q34740' then --genus
-			end
+			end --monotype handling
 		end --for
 	end --if currentItem

Tom.Reding: Whitelist now at Module:Taxonbar/whitelist; --+/-; from sandbox & testcases

2023-08-27T14:49:01Z

Whitelist now at Module:Taxonbar/whitelist; --+/-; from sandbox & testcases

← Previous revision		Revision as of 14:49, 27 August 2023
Line 156:		Line 156:
	function p.authorityControlTaxon( frame )		function p.authorityControlTaxon( frame )
	local resolveEntity = require( 'Module:ResolveEntityId' )		local resolveEntity = require( 'Module:ResolveEntityId' )
			local whitelist = require( 'Module:Taxonbar/whitelist' ).whitelist --to create acceptableInstanceOf_Strict & acceptableInstanceOf_All
	local parentArgs = copyTable(frame:getParent().args)		local parentArgs = copyTable(frame:getParent().args)
	local currentTitle = mw.title.getCurrentTitle()		local currentTitle = mw.title.getCurrentTitle()
Line 174:		Line 175:
	'', -- [7] placeholder for [[Category:Taxonbars with from2 matching article title]]		'', -- [7] placeholder for [[Category:Taxonbars with from2 matching article title]]
	'', -- [8] placeholder for [[Category:Taxonbars with from2 matching article title & QID]]		'', -- [8] placeholder for [[Category:Taxonbars with from2 matching article title & QID]]
	'', -- [9] placeholder for [[Category:Taxonbars with manual taxon IDs]] ~~--renamed 'using' -> 'with'~~		'', -- [9] placeholder for [[Category:Taxonbars with manual taxon IDs]]
	'', --[10] placeholder for [[Category:Taxonbars with manual taxon IDs identical to Wikidata]]		'', --[10] placeholder for [[Category:Taxonbars with manual taxon IDs identical to Wikidata]]
	'', --[11] placeholder for [[Category:Taxonbars with manual taxon IDs differing from Wikidata]]		'', --[11] placeholder for [[Category:Taxonbars with manual taxon IDs differing from Wikidata]]
	'', --[12] placeholder for [[Category:Taxonbars with unknown parameters]]		'', --[12] placeholder for [[Category:Taxonbars with unknown parameters]]
	'', --[13] placeholder for [[Category:Taxonbars with unnamed parameters]]		'', --[13] placeholder for [[Category:Taxonbars with unnamed parameters]]
	'', --[14] placeholder for [[Category:Taxonbars with multiple manual Wikidata items]] ~~--renamed 'using' -> 'with'~~		'', --[14] placeholder for [[Category:Taxonbars with multiple manual Wikidata items]]
	'', --[15] placeholder for [[Category:Taxonbars with automatically added basionyms]]		'', --[15] placeholder for [[Category:Taxonbars with automatically added basionyms]]
	'', --[16] placeholder for [[Category:Taxonbars with automatically added original combinations]]		'', --[16] placeholder for [[Category:Taxonbars with automatically added original combinations]]
Line 190:		Line 191:
	'', --[23] placeholder for [[Category:Taxonbars with 30–34 taxon IDs]]		'', --[23] placeholder for [[Category:Taxonbars with 30–34 taxon IDs]]
	'', --[24] placeholder for [[Category:Taxonbars with 35–39 taxon IDs]]		'', --[24] placeholder for [[Category:Taxonbars with 35–39 taxon IDs]]
	'', --[25] placeholder for [[Category:Taxonbars with 40–44 taxon IDs]] ~~--renamed '40+' -> '40–44'~~		'', --[25] placeholder for [[Category:Taxonbars with 40–44 taxon IDs]]
	'', --[26] placeholder for [[Category:Taxonbars with 45+ taxon IDs]] ~~--new~~		'', --[26] placeholder for [[Category:Taxonbars with 45+ taxon IDs]]
	}
⚫	local acceptableInstanceOf_Strict = {
	['Q16521'] = 'taxon', --strict
	['Q310890'] = 'monotypic taxon', --strict
	['Q98961713'] = 'extinct taxon', --strict
	['Q2568288'] = 'ichnotaxon', --strict
	['Q23038290'] = 'fossil taxon', --strict
	['Q47487597'] = 'monotypic fossil taxon', --strict
	['Q58051350'] = 'paraphyletic group', --strict (subclass of taxon)
	['Q59278506'] = 'ootaxon', --strict

	}
⚫	local acceptableInstanceOf_All = {
	['Q16521'] = 'taxon', --strict
	['Q310890'] = 'monotypic taxon', --strict
	['Q98961713'] = 'extinct taxon', --strict
	['Q2568288'] = 'ichnotaxon', --strict
	['Q23038290'] = 'fossil taxon', --strict
	['Q47487597'] = 'monotypic fossil taxon', --strict
	['Q58051350'] = 'paraphyletic group', --strict
	['Q59278506'] = 'ootaxon', --strict
	['Q42621'] = 'hybrid', --lax
	['Q235536'] = 'incertae sedis', --lax
	['Q713623'] = 'clade', --lax
	['Q848328'] = 'serotype', --lax
	['Q857968'] = 'candidatus', --lax
	['Q17487588'] = 'unavailable combination', --lax
	}		}
		⚫	local acceptableInstanceOf_Strict = whitelist{ args = { 'strict' } }
		⚫	local acceptableInstanceOf_All = whitelist{ args = { 'all' } }

	--Assess the page's relationship with Wikidata		--Assess the page's relationship with Wikidata
Line 448:		Line 424:
	--TODO:		--TODO:
	--is monotypic genus; add species (no way to easily find these (yet?))		--is monotypic genus; add species (no way to easily find these (yet?))
	--~~...~~		--attempt(s) made at:
			-- https://www.wikidata.org/wiki/Wikidata:Property_proposal/child_monotypic_taxon
			-- ...
	end		end

Jts1882: whitelist paraphyletic group (it is a subclass of taxon at wikidata) -- see discussion at talkpage of template taxonbar

2023-06-14T14:36:48Z

whitelist paraphyletic group (it is a subclass of taxon at wikidata) -- see discussion at talkpage of template taxonbar

← Previous revision		Revision as of 14:36, 14 June 2023
Line 200:		Line 200:
	['Q23038290'] = 'fossil taxon', --strict		['Q23038290'] = 'fossil taxon', --strict
	['Q47487597'] = 'monotypic fossil taxon', --strict		['Q47487597'] = 'monotypic fossil taxon', --strict
			['Q58051350'] = 'paraphyletic group', --strict (subclass of taxon)
	['Q59278506'] = 'ootaxon', --strict		['Q59278506'] = 'ootaxon', --strict

	}		}
	local acceptableInstanceOf_All = {		local acceptableInstanceOf_All = {
Line 209:		Line 211:
	['Q23038290'] = 'fossil taxon', --strict		['Q23038290'] = 'fossil taxon', --strict
	['Q47487597'] = 'monotypic fossil taxon', --strict		['Q47487597'] = 'monotypic fossil taxon', --strict
			['Q58051350'] = 'paraphyletic group', --strict
	['Q59278506'] = 'ootaxon', --strict		['Q59278506'] = 'ootaxon', --strict
	['Q42621'] = 'hybrid', --lax		['Q42621'] = 'hybrid', --lax

Jts1882: add ootaxon to allowed taxon types

2023-06-01T08:15:00Z

add ootaxon to allowed taxon types

← Previous revision		Revision as of 08:15, 1 June 2023
Line 200:		Line 200:
	['Q23038290'] = 'fossil taxon', --strict		['Q23038290'] = 'fossil taxon', --strict
	['Q47487597'] = 'monotypic fossil taxon', --strict		['Q47487597'] = 'monotypic fossil taxon', --strict
			['Q59278506'] = 'ootaxon', --strict
	}		}
	local acceptableInstanceOf_All = {		local acceptableInstanceOf_All = {
Line 208:		Line 209:
	['Q23038290'] = 'fossil taxon', --strict		['Q23038290'] = 'fossil taxon', --strict
	['Q47487597'] = 'monotypic fossil taxon', --strict		['Q47487597'] = 'monotypic fossil taxon', --strict
			['Q59278506'] = 'ootaxon', --strict
	['Q42621'] = 'hybrid', --lax		['Q42621'] = 'hybrid', --lax
	['Q235536'] = 'incertae sedis', --lax		['Q235536'] = 'incertae sedis', --lax

← Previous revision		Revision as of 20:46, 8 March 2024
Line 183:		Line 183:
	'', --[15] placeholder for [[Category:Taxonbars with automatically added basionyms]]		'', --[15] placeholder for [[Category:Taxonbars with automatically added basionyms]]
	'', --[16] placeholder for [[Category:Taxonbars with automatically added original combinations]]		'', --[16] placeholder for [[Category:Taxonbars with automatically added original combinations]]
	'', --[17] placeholder for [[Category:Taxonbars with automatically added monotypic ~~genera~~]]		'', --[17] placeholder for [[Category:Taxonbars with automatically added monotypic species]]
	'', --[18] placeholder for [[Category:Taxonbars of ~~monotypic~~ ~~species~~ ~~missing~~ genera]]		'', --[18] placeholder for [[Category:Taxonbars with automatically added monotypic genera]]
	'', --[19] placeholder for [[Category:Taxonbars ~~without~~ ~~primary~~ ~~Wikidata~~ ~~taxon~~ ~~IDs~~]]		'', --[19] placeholder for [[Category:Taxonbars of monotypic species missing genera]]
	'', --[20] placeholder for [[Category:Taxonbars ~~without~~ ~~secondary~~ ~~Wikidata~~ ~~taxon~~ ~~IDs~~]]		'', --[20] placeholder for [[Category:Taxonbars of monotypic genera missing species]]
	'', --[21] placeholder for [[Category:Taxonbars ~~with~~ ~~20–24~~ taxon IDs]]		'', --[21] placeholder for [[Category:Taxonbars without primary Wikidata taxon IDs]]
	'', --[22] placeholder for [[Category:Taxonbars ~~with~~ ~~25–29~~ taxon IDs]]		'', --[22] placeholder for [[Category:Taxonbars without secondary Wikidata taxon IDs]]
	'', --[23] placeholder for [[Category:Taxonbars with ~~30–34~~ taxon IDs]]		'', --[23] placeholder for [[Category:Taxonbars with 20–24 taxon IDs]]
	'', --[24] placeholder for [[Category:Taxonbars with ~~35–39~~ taxon IDs]]		'', --[24] placeholder for [[Category:Taxonbars with 25–29 taxon IDs]]
	'', --[25] placeholder for [[Category:Taxonbars with ~~40–44~~ taxon IDs]]		'', --[25] placeholder for [[Category:Taxonbars with 30–34 taxon IDs]]
	'', --[26] placeholder for [[Category:Taxonbars with ~~45+~~ taxon IDs]]		'', --[26] placeholder for [[Category:Taxonbars with 35–39 taxon IDs]]
	'', --[27] placeholder for [[Category:Taxonbars with ~~automatically~~ ~~added~~ ~~monotypic species~~]~~] --TODO: reindex adjacent to [17~~]		'', --[27] placeholder for [[Category:Taxonbars with 40–44 taxon IDs]]
	'', --[28] placeholder for [[Category:Taxonbars of ~~monotypic~~ ~~genera~~ ~~missing species~~]~~] --TODO: reindex adjacent to [18~~]		'', --[28] placeholder for [[Category:Taxonbars with 45+ taxon IDs]]
	}		}
	local acceptableInstanceOf_Strict = whitelist{ args = { 'strict' } }		local acceptableInstanceOf_Strict = whitelist{ args = { 'strict' } }
Line 417:		Line 417:
	--append monotypic genus & track		--append monotypic genus & track
	parentArgs['from'..fromTitleCount] = parentMonoGenus		parentArgs['from'..fromTitleCount] = parentMonoGenus
	tCats[17] = '[[Category:Taxonbars with automatically added monotypic genera]]'		tCats[18] = '[[Category:Taxonbars with automatically added monotypic genera]]'
	break		break
	end end end end		end end end end
	if parentMonoGenus == nil or tFroms[parentMonoGenus] == nil then		if parentMonoGenus == nil or tFroms[parentMonoGenus] == nil then
	tCats[18] = '[[Category:Taxonbars of monotypic species missing genera]]'		tCats[19] = '[[Category:Taxonbars of monotypic species missing genera]]'
	break		break
	end		end
Line 452:		Line 452:
	--append monotypic species & track		--append monotypic species & track
	parentArgs['from'..fromTitleCount] = childMonoSpecies		parentArgs['from'..fromTitleCount] = childMonoSpecies
	tCats[27] = '[[Category:Taxonbars with automatically added monotypic species]]'		tCats[17] = '[[Category:Taxonbars with automatically added monotypic species]]'
	break		break
	end end end end		end end end end
	if childMonoSpecies == nil or tFroms[childMonoSpecies] == nil then		if childMonoSpecies == nil or tFroms[childMonoSpecies] == nil then
	tCats[28] = '[[Category:Taxonbars of monotypic genera missing species]]'		tCats[20] = '[[Category:Taxonbars of monotypic genera missing species]]'
	break		break
	end		end
Line 580:		Line 580:
	end --for		end --for

	if sourceCount >= 45 then tCats[26] = '[[Category:Taxonbars with 45+ taxon IDs]]'		if sourceCount >= 45 then tCats[28] = '[[Category:Taxonbars with 45+ taxon IDs]]'
	elseif sourceCount >= 40 then tCats[25] = '[[Category:Taxonbars with 40–44 taxon IDs]]' --endashes		elseif sourceCount >= 40 then tCats[27] = '[[Category:Taxonbars with 40–44 taxon IDs]]' --endashes
	elseif sourceCount >= 35 then tCats[24] = '[[Category:Taxonbars with 35–39 taxon IDs]]'		elseif sourceCount >= 35 then tCats[26] = '[[Category:Taxonbars with 35–39 taxon IDs]]'
	elseif sourceCount >= 30 then tCats[23] = '[[Category:Taxonbars with 30–34 taxon IDs]]'		elseif sourceCount >= 30 then tCats[25] = '[[Category:Taxonbars with 30–34 taxon IDs]]'
	elseif sourceCount >= 25 then tCats[22] = '[[Category:Taxonbars with 25–29 taxon IDs]]'		elseif sourceCount >= 25 then tCats[24] = '[[Category:Taxonbars with 25–29 taxon IDs]]'
	elseif sourceCount >= 20 then tCats[21] = '[[Category:Taxonbars with 20–24 taxon IDs]]'		elseif sourceCount >= 20 then tCats[23] = '[[Category:Taxonbars with 20–24 taxon IDs]]'
	end		end

Line 605:		Line 605:
	navboxParams['list'..f] = table.concat( elements )		navboxParams['list'..f] = table.concat( elements )
	elseif currentEntityId and (currentEntityId == parentArgs['from'..f] or fromTitleCount == 1) then		elseif currentEntityId and (currentEntityId == parentArgs['from'..f] or fromTitleCount == 1) then
	tCats[19] = '[[Category:Taxonbars without primary Wikidata taxon IDs]]'		tCats[21] = '[[Category:Taxonbars without primary Wikidata taxon IDs]]'
	else		else
	tCats[20] = '[[Category:Taxonbars without secondary Wikidata taxon IDs]]'		tCats[22] = '[[Category:Taxonbars without secondary Wikidata taxon IDs]]'
	end		end

Line 629:		Line 629:
	--remove duplicates and don't bother moving page title to top		--remove duplicates and don't bother moving page title to top
	local rowIDs = {}		local rowIDs = {}
	for f = 1,fromTitleCount,1		for f = 1, fromTitleCount, 1
	do		do
	if not isNilOrEmpty( parentArgs['title'..f] ) then		if not isNilOrEmpty( parentArgs['title'..f] ) then
Line 655:		Line 655:
	navboxParams['navbar'] = 'off'		navboxParams['navbar'] = 'off'
	end		end
	elseif parentArgs['noTitle'..firstRow] then		elseif parentArgs['noTitle'..firstRow] then --show title & taxon for 1-row taxonbars, per talk
	navboxParams['~~group~~'~~..firstRow~~] = '[[Help:Taxon identifiers\|Taxon identifiers]]'		navboxParams['title'] = '[[Help:Taxon identifiers\|Taxon identifiers]]'
			navboxParams['state'] = 'off'
			navboxParams['navbar'] = 'off'
	else		else
	navboxParams['group'..firstRow] = '[[Help:Taxon identifiers\|Taxon identifiers]]<br />'..navboxParams['group'..firstRow]		navboxParams['group'..firstRow] = '[[Help:Taxon identifiers\|Taxon identifiers]]<br />'..navboxParams['group'..firstRow]