https://en.wikipedia.org/w/index.php?action=history&feed=atom&title=Transcription_factor_binding_site_databases Transcription factor binding site databases - Revision history 2025-06-20T11:41:33Z Revision history for this page on the wiki MediaWiki 1.45.0-wmf.6 https://en.wikipedia.org/w/index.php?title=Transcription_factor_binding_site_databases&diff=1198028653&oldid=prev Ymblanter: /* Transcription factor binding site databases */ 2024-01-22T20:06:05Z <p><span class="autocomment">Transcription factor binding site databases</span></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Previous revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:06, 22 January 2024</td> </tr><tr> <td colspan="2" class="diff-lineno">Line 30:</td> <td colspan="2" class="diff-lineno">Line 30:</td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data.|| database || [http://jilab.biostat.jhsph.edu/database/cgi-bin/hmChIP.pl website] || &lt;ref&gt;{{cite journal | vauthors = Chen L, Wu G, Ji H | title = hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data | journal = Bioinformatics | volume = 27 | issue = 10 | pages = 1447–1448 | date = May 2011 | pmid = 21450710 | pmc = 3087956 | doi = 10.1093/bioinformatics/btr156 }}&lt;/ref&gt;</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data.|| database || [http://jilab.biostat.jhsph.edu/database/cgi-bin/hmChIP.pl website] || &lt;ref&gt;{{cite journal | vauthors = Chen L, Wu G, Ji H | title = hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data | journal = Bioinformatics | volume = 27 | issue = 10 | pages = 1447–1448 | date = May 2011 | pmid = 21450710 | pmc = 3087956 | doi = 10.1093/bioinformatics/btr156 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|HOCOMOCO</div></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|<ins style="font-weight: bold; text-decoration: none;">[[</ins>HOCOMOCO<ins style="font-weight: bold; text-decoration: none;">]]</ins></div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|a comprehensive collection of human and mouse transcription factor binding sites models.|| database || [http://hocomoco.autosome.ru/ website] || &lt;ref&gt;{{cite journal | vauthors = Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ | display-authors = 6 | title = HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models | journal = Nucleic Acids Research | volume = 44 | issue = D1 | pages = D116–D125 | date = January 2016 | pmid = 26586801 | pmc = 4702883 | doi = 10.1093/nar/gkv1249 }}&lt;/ref&gt;</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|a comprehensive collection of human and mouse transcription factor binding sites models.|| database || [http://hocomoco.autosome.ru/ website] || &lt;ref&gt;{{cite journal | vauthors = Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ | display-authors = 6 | title = HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models | journal = Nucleic Acids Research | volume = 44 | issue = D1 | pages = D116–D125 | date = January 2016 | pmid = 26586801 | pmc = 4702883 | doi = 10.1093/nar/gkv1249 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <!-- diff cache key enwiki:diff:1.41:old-1189393892:rev-1198028653:wikidiff2=table:1.14.1:ff290eae --> </table> Ymblanter https://en.wikipedia.org/w/index.php?title=Transcription_factor_binding_site_databases&diff=1189393892&oldid=prev JoeNMLC: /* top */ ce, rm orphan tag (Query 38614); ► Wikiproject Orphanage: You can help! ● 2023-12-11T15:26:08Z <p><span class="autocomment">top: </span> ce, rm orphan tag (Query 38614); ► Wikiproject Orphanage: <a href="/wiki/Wikipedia:ORPHAN" class="mw-redirect" title="Wikipedia:ORPHAN">You can help!</a> ●</p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Previous revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 15:26, 11 December 2023</td> </tr><tr> <td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>{{Orphan|date=November 2016}}</div></td> <td colspan="2" class="diff-empty diff-side-added"></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><br /></td> <td colspan="2" class="diff-empty diff-side-added"></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Transcription factor|Transcription factors]] are proteins that bind genomic regulatory sites. Identification of [[Regulation of gene expression|genomic regulatory]] elements is essential for understanding the dynamics of developmental, physiological and pathological processes. Recent advances in [[chromatin immunoprecipitation]] followed by sequencing ([[ChIP-sequencing|ChIP-seq]]) have provided powerful ways to identify genome-wide profiling of [[DNA-binding protein]]s and [[histone]] modifications.&lt;ref&gt;{{cite journal | vauthors = Park PJ | title = ChIP-seq: advantages and challenges of a maturing technology | journal = Nature Reviews. Genetics | volume = 10 | issue = 10 | pages = 669–680 | date = October 2009 | pmid = 19736561 | pmc = 3191340 | doi = 10.1038/nrg2641 }}&lt;/ref&gt;&lt;ref&gt;{{cite journal | vauthors = Farnham PJ | title = Insights from genomic profiling of transcription factors | journal = Nature Reviews. Genetics | volume = 10 | issue = 9 | pages = 605–616 | date = September 2009 | pmid = 19668247 | pmc = 2846386 | doi = 10.1038/nrg2636 }}&lt;/ref&gt; The application of ChIP-seq methods has reliably discovered transcription factor binding sites and histone modification sites.</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Transcription factor|Transcription factors]] are proteins that bind genomic regulatory sites. Identification of [[Regulation of gene expression|genomic regulatory]] elements is essential for understanding the dynamics of developmental, physiological and pathological processes. Recent advances in [[chromatin immunoprecipitation]] followed by sequencing ([[ChIP-sequencing|ChIP-seq]]) have provided powerful ways to identify genome-wide profiling of [[DNA-binding protein]]s and [[histone]] modifications.&lt;ref&gt;{{cite journal | vauthors = Park PJ | title = ChIP-seq: advantages and challenges of a maturing technology | journal = Nature Reviews. Genetics | volume = 10 | issue = 10 | pages = 669–680 | date = October 2009 | pmid = 19736561 | pmc = 3191340 | doi = 10.1038/nrg2641 }}&lt;/ref&gt;&lt;ref&gt;{{cite journal | vauthors = Farnham PJ | title = Insights from genomic profiling of transcription factors | journal = Nature Reviews. Genetics | volume = 10 | issue = 9 | pages = 605–616 | date = September 2009 | pmid = 19668247 | pmc = 2846386 | doi = 10.1038/nrg2636 }}&lt;/ref&gt; The application of ChIP-seq methods has reliably discovered transcription factor binding sites and histone modification sites.</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> </tr> <!-- diff cache key enwiki:diff:1.41:old-1187734126:rev-1189393892:wikidiff2=table:1.14.1:ff290eae --> </table> JoeNMLC https://en.wikipedia.org/w/index.php?title=Transcription_factor_binding_site_databases&diff=1187734126&oldid=prev Citation bot: Alter: pages. Add: doi-access. Formatted dashes. | Use this bot. Report bugs. | Suggested by Headbomb | #UCB_toolbar 2023-12-01T02:30:44Z <p>Alter: pages. Add: doi-access. Formatted <a href="/wiki/Wikipedia:ENDASH" class="mw-redirect" title="Wikipedia:ENDASH">dashes</a>. | <a href="/wiki/Wikipedia:UCB" class="mw-redirect" title="Wikipedia:UCB">Use this bot</a>. <a href="/wiki/Wikipedia:DBUG" class="mw-redirect" title="Wikipedia:DBUG">Report bugs</a>. | Suggested by Headbomb | #UCB_toolbar</p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Previous revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 02:30, 1 December 2023</td> </tr><tr> <td colspan="2" class="diff-lineno">Line 52:</td> <td colspan="2" class="diff-lineno">Line 52:</td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|TRANSFAC</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|TRANSFAC</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>| A long-standing curated database of regulatory sites, enhancers, binding site predictions, PSSMs and related analytical software. || database || [https://genexplain.com/transfac/ website] || &lt;ref&gt;{{cite journal | vauthors = Kel A, Voss N, Jauregui R, Kel-Margoulis O, Wingender E | title = Beyond microarrays: find key transcription factors controlling signal transduction pathways | journal = BMC Bioinformatics | volume = 7 | issue = Suppl 2 | pages = <del style="font-weight: bold; text-decoration: none;">S2-S13</del> | date = September 2006 | pmid = 17118134 | pmc = 1683568 | doi = 10.1186/1471-2105-7-S2-S13 }}&lt;/ref&gt;</div></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>| A long-standing curated database of regulatory sites, enhancers, binding site predictions, PSSMs and related analytical software. || database || [https://genexplain.com/transfac/ website] || &lt;ref&gt;{{cite journal | vauthors = Kel A, Voss N, Jauregui R, Kel-Margoulis O, Wingender E | title = Beyond microarrays: find key transcription factors controlling signal transduction pathways | journal = BMC Bioinformatics | volume = 7 | issue = Suppl 2 | pages = <ins style="font-weight: bold; text-decoration: none;">S2–S13</ins> | date = September 2006 | pmid = 17118134 | pmc = 1683568 | doi = 10.1186/1471-2105-7-S2-S13<ins style="font-weight: bold; text-decoration: none;"> | doi-access = free</ins> }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|colspan="5" | </div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|colspan="5" | </div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td> </tr> <!-- diff cache key enwiki:diff:1.41:old-1166832137:rev-1187734126:wikidiff2=table:1.14.1:ff290eae --> </table> Citation bot https://en.wikipedia.org/w/index.php?title=Transcription_factor_binding_site_databases&diff=1166832137&oldid=prev 74.123.89.5: Add transfac.. 2023-07-24T01:10:00Z <p>Add transfac..</p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Previous revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 01:10, 24 July 2023</td> </tr><tr> <td colspan="2" class="diff-lineno">Line 50:</td> <td colspan="2" class="diff-lineno">Line 50:</td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|[https://tflink.net/ website]</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|[https://tflink.net/ website]</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|&lt;ref&gt;{{cite journal | vauthors = Liska O, Bohár B, Hidas A, Korcsmáros T, Papp B, Fazekas D, Ari E | title = TFLink: an integrated gateway to access transcription factor-target gene interactions for multiple species | journal = Database | volume = 2022 | date = September 2022 | pmid = 36124642 | pmc = 9480832 | doi = 10.1093/database/baac083 }}&lt;/ref&gt;</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|&lt;ref&gt;{{cite journal | vauthors = Liska O, Bohár B, Hidas A, Korcsmáros T, Papp B, Fazekas D, Ari E | title = TFLink: an integrated gateway to access transcription factor-target gene interactions for multiple species | journal = Database | volume = 2022 | date = September 2022 | pmid = 36124642 | pmc = 9480832 | doi = 10.1093/database/baac083 }}&lt;/ref&gt;</div></td> </tr> <tr> <td colspan="2" class="diff-empty diff-side-deleted"></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td colspan="2" class="diff-empty diff-side-deleted"></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|TRANSFAC</div></td> </tr> <tr> <td colspan="2" class="diff-empty diff-side-deleted"></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>| A long-standing curated database of regulatory sites, enhancers, binding site predictions, PSSMs and related analytical software. || database || [https://genexplain.com/transfac/ website] || &lt;ref&gt;{{cite journal | vauthors = Kel A, Voss N, Jauregui R, Kel-Margoulis O, Wingender E | title = Beyond microarrays: find key transcription factors controlling signal transduction pathways | journal = BMC Bioinformatics | volume = 7 | issue = Suppl 2 | pages = S2-S13 | date = September 2006 | pmid = 17118134 | pmc = 1683568 | doi = 10.1186/1471-2105-7-S2-S13 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|colspan="5" | </div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|colspan="5" | </div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td> </tr> <!-- diff cache key enwiki:diff:1.41:old-1136564959:rev-1166832137:wikidiff2=table:1.14.1:ff290eae --> </table> 74.123.89.5 https://en.wikipedia.org/w/index.php?title=Transcription_factor_binding_site_databases&diff=1136564959&oldid=prev WikiCleanerBot: v2.05b - Bot T18 CW#553 - Fix errors for CW project (<nowiki> tags) 2023-01-30T23:54:45Z <p>v2.05b - <a href="/wiki/User:WikiCleanerBot#T18" title="User:WikiCleanerBot">Bot T18 CW#553</a> - Fix errors for <a href="/wiki/Wikipedia:WCW" class="mw-redirect" title="Wikipedia:WCW">CW project</a> (&lt;nowiki&gt; tags)</p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Previous revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 23:54, 30 January 2023</td> </tr><tr> <td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Orphan|date=November 2016}}</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Orphan|date=November 2016}}</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[Transcription factor|Transcription factors]]<del style="font-weight: bold; text-decoration: none;">&lt;nowiki/&gt;</del> are proteins that bind genomic regulatory sites. Identification of [[Regulation of gene expression|genomic regulatory]] elements is essential for understanding the dynamics of developmental, physiological and pathological processes. Recent advances in [[chromatin immunoprecipitation]] followed by sequencing ([[ChIP-sequencing|ChIP-seq]]) have provided powerful ways to identify genome-wide profiling of [[DNA-binding protein]]s and [[histone]] modifications.&lt;ref&gt;{{cite journal | vauthors = Park PJ | title = ChIP-seq: advantages and challenges of a maturing technology | journal = Nature Reviews. Genetics | volume = 10 | issue = 10 | pages = 669–680 | date = October 2009 | pmid = 19736561 | pmc = 3191340 | doi = 10.1038/nrg2641 }}&lt;/ref&gt;&lt;ref&gt;{{cite journal | vauthors = Farnham PJ | title = Insights from genomic profiling of transcription factors | journal = Nature Reviews. Genetics | volume = 10 | issue = 9 | pages = 605–616 | date = September 2009 | pmid = 19668247 | pmc = 2846386 | doi = 10.1038/nrg2636 }}&lt;/ref&gt; The application of ChIP-seq methods has reliably discovered transcription factor binding sites and histone modification sites.</div></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[Transcription factor|Transcription factors]] are proteins that bind genomic regulatory sites. Identification of [[Regulation of gene expression|genomic regulatory]] elements is essential for understanding the dynamics of developmental, physiological and pathological processes. Recent advances in [[chromatin immunoprecipitation]] followed by sequencing ([[ChIP-sequencing|ChIP-seq]]) have provided powerful ways to identify genome-wide profiling of [[DNA-binding protein]]s and [[histone]] modifications.&lt;ref&gt;{{cite journal | vauthors = Park PJ | title = ChIP-seq: advantages and challenges of a maturing technology | journal = Nature Reviews. Genetics | volume = 10 | issue = 10 | pages = 669–680 | date = October 2009 | pmid = 19736561 | pmc = 3191340 | doi = 10.1038/nrg2641 }}&lt;/ref&gt;&lt;ref&gt;{{cite journal | vauthors = Farnham PJ | title = Insights from genomic profiling of transcription factors | journal = Nature Reviews. Genetics | volume = 10 | issue = 9 | pages = 605–616 | date = September 2009 | pmid = 19668247 | pmc = 2846386 | doi = 10.1038/nrg2636 }}&lt;/ref&gt; The application of ChIP-seq methods has reliably discovered transcription factor binding sites and histone modification sites.</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Transcription factor binding site databases==</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Transcription factor binding site databases==</div></td> </tr> <!-- diff cache key enwiki:diff:1.41:old-1132993686:rev-1136564959:wikidiff2=table:1.14.1:ff290eae --> </table> WikiCleanerBot https://en.wikipedia.org/w/index.php?title=Transcription_factor_binding_site_databases&diff=1132993686&oldid=prev Jaredroach: Improve lede. Add link. 2023-01-11T18:54:53Z <p>Improve lede. Add link.</p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Previous revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 18:54, 11 January 2023</td> </tr><tr> <td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Orphan|date=November 2016}}</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Orphan|date=November 2016}}</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Identification of [[Regulation of gene expression|genomic regulatory]] elements is essential for understanding the dynamics of developmental, physiological and pathological processes. Recent advances in [[chromatin immunoprecipitation]] followed by sequencing ([[ChIP-sequencing|ChIP-seq]]) have provided powerful ways to identify genome-wide profiling of [[DNA-binding protein]]s and [[histone]] modifications.&lt;ref&gt;{{cite journal | vauthors = Park PJ | title = ChIP-seq: advantages and challenges of a maturing technology | journal = Nature Reviews. Genetics | volume = 10 | issue = 10 | pages = 669–680 | date = October 2009 | pmid = 19736561 | pmc = 3191340 | doi = 10.1038/nrg2641 }}&lt;/ref&gt;&lt;ref&gt;{{cite journal | vauthors = Farnham PJ | title = Insights from genomic profiling of transcription factors | journal = Nature Reviews. Genetics | volume = 10 | issue = 9 | pages = 605–616 | date = September 2009 | pmid = 19668247 | pmc = 2846386 | doi = 10.1038/nrg2636 }}&lt;/ref&gt; The application of ChIP-seq methods has reliably discovered transcription factor binding sites and histone modification sites.</div></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[Transcription factor|Transcription factors]]&lt;nowiki/&gt; are proteins that bind genomic regulatory sites. </ins>Identification of [[Regulation of gene expression|genomic regulatory]] elements is essential for understanding the dynamics of developmental, physiological and pathological processes. Recent advances in [[chromatin immunoprecipitation]] followed by sequencing ([[ChIP-sequencing|ChIP-seq]]) have provided powerful ways to identify genome-wide profiling of [[DNA-binding protein]]s and [[histone]] modifications.&lt;ref&gt;{{cite journal | vauthors = Park PJ | title = ChIP-seq: advantages and challenges of a maturing technology | journal = Nature Reviews. Genetics | volume = 10 | issue = 10 | pages = 669–680 | date = October 2009 | pmid = 19736561 | pmc = 3191340 | doi = 10.1038/nrg2641 }}&lt;/ref&gt;&lt;ref&gt;{{cite journal | vauthors = Farnham PJ | title = Insights from genomic profiling of transcription factors | journal = Nature Reviews. Genetics | volume = 10 | issue = 9 | pages = 605–616 | date = September 2009 | pmid = 19668247 | pmc = 2846386 | doi = 10.1038/nrg2636 }}&lt;/ref&gt; The application of ChIP-seq methods has reliably discovered transcription factor binding sites and histone modification sites.</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Transcription factor binding site databases==</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Transcription factor binding site databases==</div></td> </tr> <!-- diff cache key enwiki:diff:1.41:old-1130863065:rev-1132993686:wikidiff2=table:1.14.1:ff290eae --> </table> Jaredroach https://en.wikipedia.org/w/index.php?title=Transcription_factor_binding_site_databases&diff=1130863065&oldid=prev Boghog: Alter: pages. Formatted dashes. | Use this tool. Report bugs. | #UCB_Gadget 2023-01-01T10:16:38Z <p>Alter: pages. Formatted <a href="/wiki/Wikipedia:ENDASH" class="mw-redirect" title="Wikipedia:ENDASH">dashes</a>. | <a href="/wiki/Wikipedia:UCB" class="mw-redirect" title="Wikipedia:UCB">Use this tool</a>. <a href="/wiki/Wikipedia:DBUG" class="mw-redirect" title="Wikipedia:DBUG">Report bugs</a>. | #UCB_Gadget</p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Previous revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 10:16, 1 January 2023</td> </tr><tr> <td colspan="2" class="diff-lineno">Line 12:</td> <td colspan="2" class="diff-lineno">Line 12:</td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|ChIPBase</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|ChIPBase</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|ChIPBase a database for [[Transcription factor-binding site]]s, motifs (~1290 transcription factors) and decoding the transcriptional regulation of [[LncRNA]]s, [[miRNAs]] and protein-coding genes from ~10,200 curated peak datasets derived from ChIP-seq methods in 10 species || database || [http://rna.sysu.edu.cn/chipbase/ website] || &lt;ref&gt;{{cite journal | vauthors = Yang JH, Li JH, Jiang S, Zhou H, Qu LH | title = ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data | journal = Nucleic Acids Research | volume = 41 | issue = Database issue | pages = <del style="font-weight: bold; text-decoration: none;">D177-D187</del> | date = January 2013 | pmid = 23161675 | pmc = 3531181 | doi = 10.1093/nar/gks1060 }}&lt;/ref&gt;</div></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|ChIPBase a database for [[Transcription factor-binding site]]s, motifs (~1290 transcription factors) and decoding the transcriptional regulation of [[LncRNA]]s, [[miRNAs]] and protein-coding genes from ~10,200 curated peak datasets derived from ChIP-seq methods in 10 species || database || [http://rna.sysu.edu.cn/chipbase/ website] || &lt;ref&gt;{{cite journal | vauthors = Yang JH, Li JH, Jiang S, Zhou H, Qu LH | title = ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data | journal = Nucleic Acids Research | volume = 41 | issue = Database issue | pages = <ins style="font-weight: bold; text-decoration: none;">D177–D187</ins> | date = January 2013 | pmid = 23161675 | pmc = 3531181 | doi = 10.1093/nar/gks1060 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|ChEA</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|ChEA</div></td> </tr> <tr> <td colspan="2" class="diff-lineno">Line 24:</td> <td colspan="2" class="diff-lineno">Line 24:</td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|CTCFBSDB</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|CTCFBSDB</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|a database for [[CTCF]] binding sites and genome organization || database|| [http://insulatordb.uthsc.edu/ website] || &lt;ref&gt;{{cite journal | vauthors = Ziebarth JD, Bhattacharya A, Cui Y | title = CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization | journal = Nucleic Acids Research | volume = 41 | issue = Database issue | pages = <del style="font-weight: bold; text-decoration: none;">D188-D194</del> | date = January 2013 | pmid = 23193294 | pmc = 3531215 | doi = 10.1093/nar/gks1165 }}&lt;/ref&gt;</div></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|a database for [[CTCF]] binding sites and genome organization || database|| [http://insulatordb.uthsc.edu/ website] || &lt;ref&gt;{{cite journal | vauthors = Ziebarth JD, Bhattacharya A, Cui Y | title = CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization | journal = Nucleic Acids Research | volume = 41 | issue = Database issue | pages = <ins style="font-weight: bold; text-decoration: none;">D188–D194</ins> | date = January 2013 | pmid = 23193294 | pmc = 3531215 | doi = 10.1093/nar/gks1165 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|Factorbook</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|Factorbook</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|a Wiki-based database for transcription factor-binding data generated by the [[ENCODE]] consortium. || database || [http://www.factorbook.org/ website] || &lt;ref&gt;{{cite journal | vauthors = Wang J, Zhuang J, Iyer S, Lin XY, Greven MC, Kim BH, Moore J, Pierce BG, Dong X, Virgil D, Birney E, Hung JH, Weng Z | display-authors = 6 | title = Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium | journal = Nucleic Acids Research | volume = 41 | issue = Database issue | pages = <del style="font-weight: bold; text-decoration: none;">D171-D176</del> | date = January 2013 | pmid = 23203885 | pmc = 3531197 | doi = 10.1093/nar/gks1221 }}&lt;/ref&gt;</div></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|a Wiki-based database for transcription factor-binding data generated by the [[ENCODE]] consortium. || database || [http://www.factorbook.org/ website] || &lt;ref&gt;{{cite journal | vauthors = Wang J, Zhuang J, Iyer S, Lin XY, Greven MC, Kim BH, Moore J, Pierce BG, Dong X, Virgil D, Birney E, Hung JH, Weng Z | display-authors = 6 | title = Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium | journal = Nucleic Acids Research | volume = 41 | issue = Database issue | pages = <ins style="font-weight: bold; text-decoration: none;">D171–D176</ins> | date = January 2013 | pmid = 23203885 | pmc = 3531197 | doi = 10.1093/nar/gks1221 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|hmChIP</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|hmChIP</div></td> </tr> <tr> <td colspan="2" class="diff-lineno">Line 33:</td> <td colspan="2" class="diff-lineno">Line 33:</td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|HOCOMOCO</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|HOCOMOCO</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|a comprehensive collection of human and mouse transcription factor binding sites models.|| database || [http://hocomoco.autosome.ru/ website] || &lt;ref&gt;{{cite journal | vauthors = Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ | display-authors = 6 | title = HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models | journal = Nucleic Acids Research | volume = 44 | issue = D1 | pages = <del style="font-weight: bold; text-decoration: none;">D116-D125</del> | date = January 2016 | pmid = 26586801 | pmc = 4702883 | doi = 10.1093/nar/gkv1249 }}&lt;/ref&gt;</div></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|a comprehensive collection of human and mouse transcription factor binding sites models.|| database || [http://hocomoco.autosome.ru/ website] || &lt;ref&gt;{{cite journal | vauthors = Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ | display-authors = 6 | title = HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models | journal = Nucleic Acids Research | volume = 44 | issue = D1 | pages = <ins style="font-weight: bold; text-decoration: none;">D116–D125</ins> | date = January 2016 | pmid = 26586801 | pmc = 4702883 | doi = 10.1093/nar/gkv1249 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|[[JASPAR]]</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|[[JASPAR]]</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>| The JASPAR CORE database contains a curated, non-redundant set of profiles, derived from published collections of experimentally defined transcription factor binding sites for eukaryotes.|| database || [http://jaspar.genereg.net/ website] || &lt;ref&gt;{{cite journal | vauthors = Sandelin A, Alkema W, Engström P, Wasserman WW, Lenhard B | title = JASPAR: an open-access database for eukaryotic transcription factor binding profiles | journal = Nucleic Acids Research | volume = 32 | issue = Database issue | pages = <del style="font-weight: bold; text-decoration: none;">D91-D94</del> | date = January 2004 | pmid = 14681366 | pmc = 308747 | doi = 10.1093/nar/gkh012 }}&lt;/ref&gt;&lt;ref&gt;{{cite journal | vauthors = Fornes O, Castro-Mondragon JA, Khan A, van der Lee R, Zhang X, Richmond PA, Modi BP, Correard S, Gheorghe M, Baranašić D, Santana-Garcia W, Tan G, Chèneby J, Ballester B, Parcy F, Sandelin A, Lenhard B, Wasserman WW, Mathelier A | display-authors = 6 | title = JASPAR 2020: update of the open-access database of transcription factor binding profiles | journal = Nucleic Acids Research | volume = 48 | issue = D1 | pages = <del style="font-weight: bold; text-decoration: none;">D87-D92</del> | date = January 2020 | pmid = 31701148 | pmc = 7145627 | doi = 10.1093/nar/gkz1001 }}&lt;/ref&gt;</div></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>| The JASPAR CORE database contains a curated, non-redundant set of profiles, derived from published collections of experimentally defined transcription factor binding sites for eukaryotes.|| database || [http://jaspar.genereg.net/ website] || &lt;ref&gt;{{cite journal | vauthors = Sandelin A, Alkema W, Engström P, Wasserman WW, Lenhard B | title = JASPAR: an open-access database for eukaryotic transcription factor binding profiles | journal = Nucleic Acids Research | volume = 32 | issue = Database issue | pages = <ins style="font-weight: bold; text-decoration: none;">D91–D94</ins> | date = January 2004 | pmid = 14681366 | pmc = 308747 | doi = 10.1093/nar/gkh012 }}&lt;/ref&gt;&lt;ref&gt;{{cite journal | vauthors = Fornes O, Castro-Mondragon JA, Khan A, van der Lee R, Zhang X, Richmond PA, Modi BP, Correard S, Gheorghe M, Baranašić D, Santana-Garcia W, Tan G, Chèneby J, Ballester B, Parcy F, Sandelin A, Lenhard B, Wasserman WW, Mathelier A | display-authors = 6 | title = JASPAR 2020: update of the open-access database of transcription factor binding profiles | journal = Nucleic Acids Research | volume = 48 | issue = D1 | pages = <ins style="font-weight: bold; text-decoration: none;">D87–D92</ins> | date = January 2020 | pmid = 31701148 | pmc = 7145627 | doi = 10.1093/nar/gkz1001 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|MethMotif</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|MethMotif</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|An integrative cell-specific database of transcription factor binding motifs coupled with DNA methylation profiles.|| database || [http://bioinfo-csi.nus.edu.sg/methmotif/ website] || &lt;ref&gt;{{cite journal | vauthors = Xuan Lin QX, Sian S, An O, Thieffry D, Jha S, Benoukraf T | title = MethMotif: an integrative cell specific database of transcription factor binding motifs coupled with DNA methylation profiles | journal = Nucleic Acids Research | volume = 47 | issue = D1 | pages = <del style="font-weight: bold; text-decoration: none;">D145-D154</del> | date = January 2019 | pmid = 30380113 | pmc = 6323897 | doi = 10.1093/nar/gky1005 | author-link6 = Touati Benoukraf }}&lt;/ref&gt;</div></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|An integrative cell-specific database of transcription factor binding motifs coupled with DNA methylation profiles.|| database || [http://bioinfo-csi.nus.edu.sg/methmotif/ website] || &lt;ref&gt;{{cite journal | vauthors = Xuan Lin QX, Sian S, An O, Thieffry D, Jha S, Benoukraf T | title = MethMotif: an integrative cell specific database of transcription factor binding motifs coupled with DNA methylation profiles | journal = Nucleic Acids Research | volume = 47 | issue = D1 | pages = <ins style="font-weight: bold; text-decoration: none;">D145–D154</ins> | date = January 2019 | pmid = 30380113 | pmc = 6323897 | doi = 10.1093/nar/gky1005 | author-link6 = Touati Benoukraf }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|SwissRegulon</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|SwissRegulon</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>| a database of genome-wide annotations of regulatory sites. || database || [https://web.archive.org/web/20140529224906/http://swissregulon.unibas.ch/fcgi/sr/swissregulon website] || &lt;ref&gt;{{cite journal | vauthors = Pachkov M, Balwierz PJ, Arnold P, Ozonov E, van Nimwegen E | title = SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates | journal = Nucleic Acids Research | volume = 41 | issue = Database issue | pages = <del style="font-weight: bold; text-decoration: none;">D214-D220</del> | date = January 2013 | pmid = 23180783 | pmc = 3531101 | doi = 10.1093/nar/gks1145 }}&lt;/ref&gt;</div></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>| a database of genome-wide annotations of regulatory sites. || database || [https://web.archive.org/web/20140529224906/http://swissregulon.unibas.ch/fcgi/sr/swissregulon website] || &lt;ref&gt;{{cite journal | vauthors = Pachkov M, Balwierz PJ, Arnold P, Ozonov E, van Nimwegen E | title = SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates | journal = Nucleic Acids Research | volume = 41 | issue = Database issue | pages = <ins style="font-weight: bold; text-decoration: none;">D214–D220</ins> | date = January 2013 | pmid = 23180783 | pmc = 3531101 | doi = 10.1093/nar/gks1145 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|TFLink</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|TFLink</div></td> </tr> <!-- diff cache key enwiki:diff:1.41:old-1130860419:rev-1130863065:wikidiff2=table:1.14.1:ff290eae --> </table> Boghog https://en.wikipedia.org/w/index.php?title=Transcription_factor_binding_site_databases&diff=1130860419&oldid=prev Boghog: /* Transcription factor binding site databases */ removed empty row 2023-01-01T09:53:21Z <p><span class="autocomment">Transcription factor binding site databases: </span> removed empty row</p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Previous revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 09:53, 1 January 2023</td> </tr><tr> <td colspan="2" class="diff-lineno">Line 50:</td> <td colspan="2" class="diff-lineno">Line 50:</td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|[https://tflink.net/ website]</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|[https://tflink.net/ website]</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|&lt;ref&gt;{{cite journal | vauthors = Liska O, Bohár B, Hidas A, Korcsmáros T, Papp B, Fazekas D, Ari E | title = TFLink: an integrated gateway to access transcription factor-target gene interactions for multiple species | journal = Database | volume = 2022 | date = September 2022 | pmid = 36124642 | pmc = 9480832 | doi = 10.1093/database/baac083 }}&lt;/ref&gt;</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|&lt;ref&gt;{{cite journal | vauthors = Liska O, Bohár B, Hidas A, Korcsmáros T, Papp B, Fazekas D, Ari E | title = TFLink: an integrated gateway to access transcription factor-target gene interactions for multiple species | journal = Database | volume = 2022 | date = September 2022 | pmid = 36124642 | pmc = 9480832 | doi = 10.1093/database/baac083 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td colspan="2" class="diff-empty diff-side-added"></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|colspan="5" | </div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|colspan="5" | </div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td> </tr> <!-- diff cache key enwiki:diff:1.41:old-1130860373:rev-1130860419:wikidiff2=table:1.14.1:ff290eae --> </table> Boghog https://en.wikipedia.org/w/index.php?title=Transcription_factor_binding_site_databases&diff=1130860373&oldid=prev Boghog: /* Transcription factor binding site databases */ removed redundant external links; removed excessive bolding 2023-01-01T09:52:50Z <p><span class="autocomment">Transcription factor binding site databases: </span> removed redundant external links; removed excessive bolding</p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Previous revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 09:52, 1 January 2023</td> </tr><tr> <td colspan="2" class="diff-lineno">Line 5:</td> <td colspan="2" class="diff-lineno">Line 5:</td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Transcription factor binding site databases==</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Transcription factor binding site databases==</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">'''</del>Comprehensive List of transcription factor binding sites (TFBSs) databases based on ChIP-seq data as follows:<del style="font-weight: bold; text-decoration: none;">'''</del></div></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Comprehensive List of transcription factor binding sites (TFBSs) databases based on ChIP-seq data as follows:</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{| class="wikitable"</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{| class="wikitable"</div></td> </tr> <tr> <td colspan="2" class="diff-lineno">Line 11:</td> <td colspan="2" class="diff-lineno">Line 11:</td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>! Description || type|| Link || References</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>! Description || type|| Link || References</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td colspan="2" class="diff-empty diff-side-deleted"></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|ChIPBase</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|'''[http://rna.sysu.edu.cn/chipbase/ ChIPBase]'''</div></td> <td colspan="2" class="diff-empty diff-side-added"></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|ChIPBase a database for [[Transcription factor-binding site]]s, motifs (~1290 transcription factors) and decoding the transcriptional regulation of [[LncRNA]]s, [[miRNAs]] and protein-coding genes from ~10,200 curated peak datasets derived from ChIP-seq methods in 10 species || database || [http://rna.sysu.edu.cn/chipbase/ website] || &lt;ref&gt;{{cite journal | vauthors = Yang JH, Li JH, Jiang S, Zhou H, Qu LH | title = ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data | journal = Nucleic Acids Research | volume = 41 | issue = Database issue | pages = D177-D187 | date = January 2013 | pmid = 23161675 | pmc = 3531181 | doi = 10.1093/nar/gks1060 }}&lt;/ref&gt;</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|ChIPBase a database for [[Transcription factor-binding site]]s, motifs (~1290 transcription factors) and decoding the transcriptional regulation of [[LncRNA]]s, [[miRNAs]] and protein-coding genes from ~10,200 curated peak datasets derived from ChIP-seq methods in 10 species || database || [http://rna.sysu.edu.cn/chipbase/ website] || &lt;ref&gt;{{cite journal | vauthors = Yang JH, Li JH, Jiang S, Zhou H, Qu LH | title = ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data | journal = Nucleic Acids Research | volume = 41 | issue = Database issue | pages = D177-D187 | date = January 2013 | pmid = 23161675 | pmc = 3531181 | doi = 10.1093/nar/gks1060 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td colspan="2" class="diff-empty diff-side-deleted"></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|ChEA</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|'''[http://amp.pharm.mssm.edu/lib/chea.jsp ChEA]'''</div></td> <td colspan="2" class="diff-empty diff-side-added"></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|transcription factor regulation inferred from integrating genome-wide ChIP-X experiments. || database || [http://amp.pharm.mssm.edu/lib/chea.jsp website] || &lt;ref&gt;{{cite journal | vauthors = Lachmann A, Xu H, Krishnan J, Berger SI, Mazloom AR, Ma'ayan A | title = ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments | journal = Bioinformatics | volume = 26 | issue = 19 | pages = 2438–2444 | date = October 2010 | pmid = 20709693 | pmc = 2944209 | doi = 10.1093/bioinformatics/btq466 }}&lt;/ref&gt;</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|transcription factor regulation inferred from integrating genome-wide ChIP-X experiments. || database || [http://amp.pharm.mssm.edu/lib/chea.jsp website] || &lt;ref&gt;{{cite journal | vauthors = Lachmann A, Xu H, Krishnan J, Berger SI, Mazloom AR, Ma'ayan A | title = ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments | journal = Bioinformatics | volume = 26 | issue = 19 | pages = 2438–2444 | date = October 2010 | pmid = 20709693 | pmc = 2944209 | doi = 10.1093/bioinformatics/btq466 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td colspan="2" class="diff-empty diff-side-deleted"></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|CIS-BP</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|'''[http://cisbp.ccbr.utoronto.ca/ CIS-BP]'''</div></td> <td colspan="2" class="diff-empty diff-side-added"></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|collection of transcription factor binding sites models inferred by binding domains.|| database || [http://cisbp.ccbr.utoronto.ca/ website] || &lt;ref&gt;{{cite journal | vauthors = Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, Walhout AJ, Bouget FY, Ratsch G, Larrondo LF, Ecker JR, Hughes TR | display-authors = 6 | title = Determination and inference of eukaryotic transcription factor sequence specificity | journal = Cell | volume = 158 | issue = 6 | pages = 1431–1443 | date = September 2014 | pmid = 25215497 | pmc = 4163041 | doi = 10.1016/j.cell.2014.08.009 }}&lt;/ref&gt;</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|collection of transcription factor binding sites models inferred by binding domains.|| database || [http://cisbp.ccbr.utoronto.ca/ website] || &lt;ref&gt;{{cite journal | vauthors = Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, Walhout AJ, Bouget FY, Ratsch G, Larrondo LF, Ecker JR, Hughes TR | display-authors = 6 | title = Determination and inference of eukaryotic transcription factor sequence specificity | journal = Cell | volume = 158 | issue = 6 | pages = 1431–1443 | date = September 2014 | pmid = 25215497 | pmc = 4163041 | doi = 10.1016/j.cell.2014.08.009 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|<del style="font-weight: bold; text-decoration: none;">'''[http://cistrome.dfci.harvard.edu/pc/ </del>CistromeMap<del style="font-weight: bold; text-decoration: none;">]'''</del></div></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|CistromeMap</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|a knowledgebase and web server for ChIP-Seq and [[DNase-Seq]] studies in mouse and human. || database || [http://cistrome.dfci.harvard.edu/pc/ website] || &lt;ref&gt;{{cite journal | vauthors = Qin B, Zhou M, Ge Y, Taing L, Liu T, Wang Q, Wang S, Chen J, Shen L, Duan X, Hu S, Li W, Long H, Zhang Y, Liu XS | display-authors = 6 | title = CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human | journal = Bioinformatics | volume = 28 | issue = 10 | pages = 1411–1412 | date = May 2012 | pmid = 22495751 | pmc = 3348563 | doi = 10.1093/bioinformatics/bts157 }}&lt;/ref&gt;</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|a knowledgebase and web server for ChIP-Seq and [[DNase-Seq]] studies in mouse and human. || database || [http://cistrome.dfci.harvard.edu/pc/ website] || &lt;ref&gt;{{cite journal | vauthors = Qin B, Zhou M, Ge Y, Taing L, Liu T, Wang Q, Wang S, Chen J, Shen L, Duan X, Hu S, Li W, Long H, Zhang Y, Liu XS | display-authors = 6 | title = CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human | journal = Bioinformatics | volume = 28 | issue = 10 | pages = 1411–1412 | date = May 2012 | pmid = 22495751 | pmc = 3348563 | doi = 10.1093/bioinformatics/bts157 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td colspan="2" class="diff-empty diff-side-deleted"></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|CTCFBSDB</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|'''[http://insulatordb.uthsc.edu/ CTCFBSDB]'''</div></td> <td colspan="2" class="diff-empty diff-side-added"></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|a database for [[CTCF]] binding sites and genome organization || database|| [http://insulatordb.uthsc.edu/ website] || &lt;ref&gt;{{cite journal | vauthors = Ziebarth JD, Bhattacharya A, Cui Y | title = CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization | journal = Nucleic Acids Research | volume = 41 | issue = Database issue | pages = D188-D194 | date = January 2013 | pmid = 23193294 | pmc = 3531215 | doi = 10.1093/nar/gks1165 }}&lt;/ref&gt;</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|a database for [[CTCF]] binding sites and genome organization || database|| [http://insulatordb.uthsc.edu/ website] || &lt;ref&gt;{{cite journal | vauthors = Ziebarth JD, Bhattacharya A, Cui Y | title = CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization | journal = Nucleic Acids Research | volume = 41 | issue = Database issue | pages = D188-D194 | date = January 2013 | pmid = 23193294 | pmc = 3531215 | doi = 10.1093/nar/gks1165 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|<del style="font-weight: bold; text-decoration: none;">'''[http://www.factorbook.org/ </del>Factorbook<del style="font-weight: bold; text-decoration: none;">]'''</del></div></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|Factorbook</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|a Wiki-based database for transcription factor-binding data generated by the [[ENCODE]] consortium. || database || [http://www.factorbook.org/ website] || &lt;ref&gt;{{cite journal | vauthors = Wang J, Zhuang J, Iyer S, Lin XY, Greven MC, Kim BH, Moore J, Pierce BG, Dong X, Virgil D, Birney E, Hung JH, Weng Z | display-authors = 6 | title = Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium | journal = Nucleic Acids Research | volume = 41 | issue = Database issue | pages = D171-D176 | date = January 2013 | pmid = 23203885 | pmc = 3531197 | doi = 10.1093/nar/gks1221 }}&lt;/ref&gt;</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|a Wiki-based database for transcription factor-binding data generated by the [[ENCODE]] consortium. || database || [http://www.factorbook.org/ website] || &lt;ref&gt;{{cite journal | vauthors = Wang J, Zhuang J, Iyer S, Lin XY, Greven MC, Kim BH, Moore J, Pierce BG, Dong X, Virgil D, Birney E, Hung JH, Weng Z | display-authors = 6 | title = Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium | journal = Nucleic Acids Research | volume = 41 | issue = Database issue | pages = D171-D176 | date = January 2013 | pmid = 23203885 | pmc = 3531197 | doi = 10.1093/nar/gks1221 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td colspan="2" class="diff-empty diff-side-deleted"></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|hmChIP</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|'''[http://jilab.biostat.jhsph.edu/database/cgi-bin/hmChIP.pl hmChIP]'''</div></td> <td colspan="2" class="diff-empty diff-side-added"></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data.|| database || [http://jilab.biostat.jhsph.edu/database/cgi-bin/hmChIP.pl website] || &lt;ref&gt;{{cite journal | vauthors = Chen L, Wu G, Ji H | title = hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data | journal = Bioinformatics | volume = 27 | issue = 10 | pages = 1447–1448 | date = May 2011 | pmid = 21450710 | pmc = 3087956 | doi = 10.1093/bioinformatics/btr156 }}&lt;/ref&gt;</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data.|| database || [http://jilab.biostat.jhsph.edu/database/cgi-bin/hmChIP.pl website] || &lt;ref&gt;{{cite journal | vauthors = Chen L, Wu G, Ji H | title = hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data | journal = Bioinformatics | volume = 27 | issue = 10 | pages = 1447–1448 | date = May 2011 | pmid = 21450710 | pmc = 3087956 | doi = 10.1093/bioinformatics/btr156 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td colspan="2" class="diff-empty diff-side-deleted"></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|HOCOMOCO</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|'''[http://hocomoco.autosome.ru/ HOCOMOCO]'''</div></td> <td colspan="2" class="diff-empty diff-side-added"></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|a comprehensive collection of human and mouse transcription factor binding sites models.|| database || [http://hocomoco.autosome.ru/ website] || &lt;ref&gt;{{cite journal | vauthors = Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ | display-authors = 6 | title = HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models | journal = Nucleic Acids Research | volume = 44 | issue = D1 | pages = D116-D125 | date = January 2016 | pmid = 26586801 | pmc = 4702883 | doi = 10.1093/nar/gkv1249 }}&lt;/ref&gt;</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|a comprehensive collection of human and mouse transcription factor binding sites models.|| database || [http://hocomoco.autosome.ru/ website] || &lt;ref&gt;{{cite journal | vauthors = Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ | display-authors = 6 | title = HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models | journal = Nucleic Acids Research | volume = 44 | issue = D1 | pages = D116-D125 | date = January 2016 | pmid = 26586801 | pmc = 4702883 | doi = 10.1093/nar/gkv1249 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|<del style="font-weight: bold; text-decoration: none;">'''</del>[[JASPAR]]<del style="font-weight: bold; text-decoration: none;">'''</del></div></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|[[JASPAR]]</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>| The JASPAR CORE database contains a curated, non-redundant set of profiles, derived from published collections of experimentally defined transcription factor binding sites for eukaryotes.|| database || [http://jaspar.genereg.net/ website] || &lt;ref&gt;{{cite journal | vauthors = Sandelin A, Alkema W, Engström P, Wasserman WW, Lenhard B | title = JASPAR: an open-access database for eukaryotic transcription factor binding profiles | journal = Nucleic Acids Research | volume = 32 | issue = Database issue | pages = D91-D94 | date = January 2004 | pmid = 14681366 | pmc = 308747 | doi = 10.1093/nar/gkh012 }}&lt;/ref&gt;&lt;ref&gt;{{cite journal | vauthors = Fornes O, Castro-Mondragon JA, Khan A, van der Lee R, Zhang X, Richmond PA, Modi BP, Correard S, Gheorghe M, Baranašić D, Santana-Garcia W, Tan G, Chèneby J, Ballester B, Parcy F, Sandelin A, Lenhard B, Wasserman WW, Mathelier A | display-authors = 6 | title = JASPAR 2020: update of the open-access database of transcription factor binding profiles | journal = Nucleic Acids Research | volume = 48 | issue = D1 | pages = D87-D92 | date = January 2020 | pmid = 31701148 | pmc = 7145627 | doi = 10.1093/nar/gkz1001 }}&lt;/ref&gt;</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>| The JASPAR CORE database contains a curated, non-redundant set of profiles, derived from published collections of experimentally defined transcription factor binding sites for eukaryotes.|| database || [http://jaspar.genereg.net/ website] || &lt;ref&gt;{{cite journal | vauthors = Sandelin A, Alkema W, Engström P, Wasserman WW, Lenhard B | title = JASPAR: an open-access database for eukaryotic transcription factor binding profiles | journal = Nucleic Acids Research | volume = 32 | issue = Database issue | pages = D91-D94 | date = January 2004 | pmid = 14681366 | pmc = 308747 | doi = 10.1093/nar/gkh012 }}&lt;/ref&gt;&lt;ref&gt;{{cite journal | vauthors = Fornes O, Castro-Mondragon JA, Khan A, van der Lee R, Zhang X, Richmond PA, Modi BP, Correard S, Gheorghe M, Baranašić D, Santana-Garcia W, Tan G, Chèneby J, Ballester B, Parcy F, Sandelin A, Lenhard B, Wasserman WW, Mathelier A | display-authors = 6 | title = JASPAR 2020: update of the open-access database of transcription factor binding profiles | journal = Nucleic Acids Research | volume = 48 | issue = D1 | pages = D87-D92 | date = January 2020 | pmid = 31701148 | pmc = 7145627 | doi = 10.1093/nar/gkz1001 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td colspan="2" class="diff-empty diff-side-deleted"></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|MethMotif</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|'''[http://bioinfo-csi.nus.edu.sg/methmotif/ MethMotif]'''</div></td> <td colspan="2" class="diff-empty diff-side-added"></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|An integrative cell-specific database of transcription factor binding motifs coupled with DNA methylation profiles.|| database || [http://bioinfo-csi.nus.edu.sg/methmotif/ website] || &lt;ref&gt;{{cite journal | vauthors = Xuan Lin QX, Sian S, An O, Thieffry D, Jha S, Benoukraf T | title = MethMotif: an integrative cell specific database of transcription factor binding motifs coupled with DNA methylation profiles | journal = Nucleic Acids Research | volume = 47 | issue = D1 | pages = D145-D154 | date = January 2019 | pmid = 30380113 | pmc = 6323897 | doi = 10.1093/nar/gky1005 | author-link6 = Touati Benoukraf }}&lt;/ref&gt;</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|An integrative cell-specific database of transcription factor binding motifs coupled with DNA methylation profiles.|| database || [http://bioinfo-csi.nus.edu.sg/methmotif/ website] || &lt;ref&gt;{{cite journal | vauthors = Xuan Lin QX, Sian S, An O, Thieffry D, Jha S, Benoukraf T | title = MethMotif: an integrative cell specific database of transcription factor binding motifs coupled with DNA methylation profiles | journal = Nucleic Acids Research | volume = 47 | issue = D1 | pages = D145-D154 | date = January 2019 | pmid = 30380113 | pmc = 6323897 | doi = 10.1093/nar/gky1005 | author-link6 = Touati Benoukraf }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td colspan="2" class="diff-empty diff-side-deleted"></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|SwissRegulon</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|'''[https://web.archive.org/web/20140529224906/http://swissregulon.unibas.ch/fcgi/sr/swissregulon SwissRegulon]'''</div></td> <td colspan="2" class="diff-empty diff-side-added"></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>| a database of genome-wide annotations of regulatory sites. || database || [https://web.archive.org/web/20140529224906/http://swissregulon.unibas.ch/fcgi/sr/swissregulon website] || &lt;ref&gt;{{cite journal | vauthors = Pachkov M, Balwierz PJ, Arnold P, Ozonov E, van Nimwegen E | title = SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates | journal = Nucleic Acids Research | volume = 41 | issue = Database issue | pages = D214-D220 | date = January 2013 | pmid = 23180783 | pmc = 3531101 | doi = 10.1093/nar/gks1145 }}&lt;/ref&gt;</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>| a database of genome-wide annotations of regulatory sites. || database || [https://web.archive.org/web/20140529224906/http://swissregulon.unibas.ch/fcgi/sr/swissregulon website] || &lt;ref&gt;{{cite journal | vauthors = Pachkov M, Balwierz PJ, Arnold P, Ozonov E, van Nimwegen E | title = SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates | journal = Nucleic Acids Research | volume = 41 | issue = Database issue | pages = D214-D220 | date = January 2013 | pmid = 23180783 | pmc = 3531101 | doi = 10.1093/nar/gks1145 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td colspan="2" class="diff-empty diff-side-deleted"></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|TFLink</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|'''[https://tflink.net/ TFLink]'''</div></td> <td colspan="2" class="diff-empty diff-side-added"></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|TFLink gateway provides comprehensive and highly accurate information on transcription factor - target gene interactions, nucleotide sequences and genomic locations of transcription factor binding sites for human and six model organisms.</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|TFLink gateway provides comprehensive and highly accurate information on transcription factor - target gene interactions, nucleotide sequences and genomic locations of transcription factor binding sites for human and six model organisms.</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|database</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|database</div></td> </tr> <tr> <td colspan="2" class="diff-lineno">Line 51:</td> <td colspan="2" class="diff-lineno">Line 51:</td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|&lt;ref&gt;{{cite journal | vauthors = Liska O, Bohár B, Hidas A, Korcsmáros T, Papp B, Fazekas D, Ari E | title = TFLink: an integrated gateway to access transcription factor-target gene interactions for multiple species | journal = Database | volume = 2022 | date = September 2022 | pmid = 36124642 | pmc = 9480832 | doi = 10.1093/database/baac083 }}&lt;/ref&gt;</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|&lt;ref&gt;{{cite journal | vauthors = Liska O, Bohár B, Hidas A, Korcsmáros T, Papp B, Fazekas D, Ari E | title = TFLink: an integrated gateway to access transcription factor-target gene interactions for multiple species | journal = Database | volume = 2022 | date = September 2022 | pmid = 36124642 | pmc = 9480832 | doi = 10.1093/database/baac083 }}&lt;/ref&gt;</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|-</div></td> </tr> <tr> <td class="diff-marker" data-marker="−"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|colspan="5" | <del style="font-weight: bold; text-decoration: none;">&lt;small&gt;&lt;/small&gt;</del></div></td> <td class="diff-marker" data-marker="+"></td> <td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|colspan="5" | </div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td> </tr> <tr> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> <td class="diff-marker"></td> <td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br /></td> </tr> <!-- diff cache key enwiki:diff:1.41:old-1130860074:rev-1130860373:wikidiff2=table:1.14.1:ff290eae --> </table> Boghog https://en.wikipedia.org/w/index.php?title=Transcription_factor_binding_site_databases&diff=1130860074&oldid=prev Boghog: consistent citation formatting 2023-01-01T09:49:41Z <p>consistent citation formatting</p> <a href="//en.wikipedia.org/w/index.php?title=Transcription_factor_binding_site_databases&amp;diff=1130860074&amp;oldid=1130850712">Show changes</a> Boghog