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'''Database and sharing'''
'''Database and sharing'''
# Anderle P, Duval M, Draghici S, Kuklin A, Littlejohn TG, Medrano JF, Vilanova D, Roberts MA. Gene expression databases and data mining. Biotechniques. 2003 Mar;Suppl:36-44. {{Entrez Pubmed|12664683}}
# Anderle P, Duval M, Draghici S, Kuklin A, Littlejohn TG, Medrano JF, Vilanova D, Roberts MA. Gene expression databases and data mining. Biotechniques. 2003 Mar;Suppl:36-44. {{PMID|12664683}}
# Sherlock G, Ball CA. Microarray databases: storage and retrieval of microarray data. Methods Mol Biol. 2003;224:235-48. {{Entrez Pubmed|12710676}}
# Sherlock G, Ball CA. Microarray databases: storage and retrieval of microarray data. Methods Mol Biol. 2003;224:235-48. {{PMID|12710676}}
# Miles MF. Microarrays: lost in a storm of data? Nat Rev Neurosci. 2001 Jun;2(6):441-3. {{Entrez Pubmed|11389479}}
# Miles MF. Microarrays: lost in a storm of data? Nat Rev Neurosci. 2001 Jun;2(6):441-3. {{PMID|11389479}}
# Becker KG. The sharing of cDNA microarray data. Nat Rev Neurosci. 2001 Jun;2(6):438-40. {{Entrez Pubmed|11389478}}
# Becker KG. The sharing of cDNA microarray data. Nat Rev Neurosci. 2001 Jun;2(6):438-40. {{PMID|11389478}}
# Geschwind DH. Sharing gene expression data: an array of options. Nat Rev Neurosci. 2001 Jun;2(6):435-8. {{Entrez Pubmed|11389477}}
# Geschwind DH. Sharing gene expression data: an array of options. Nat Rev Neurosci. 2001 Jun;2(6):435-8. {{PMID|11389477}}
# Gardiner-Garden M, Littlejohn TG. A comparison of microarray databases. Brief Bioinform. 2001 May;2(2):143-58. {{Entrez Pubmed|11465732}}
# Gardiner-Garden M, Littlejohn TG. A comparison of microarray databases. Brief Bioinform. 2001 May;2(2):143-58. {{PMID|11465732}}


'''Standardization'''
'''Standardization'''
# Stoeckert CJ, Causton HC, Ball CA. Microarray databases: standards and ontologies. Nat Genet. 2002 Dec;32 Suppl 2:469-73. {{Entrez Pubmed|12454640}}
# Stoeckert CJ, Causton HC, Ball CA. Microarray databases: standards and ontologies. Nat Genet. 2002 Dec;32 Suppl 2:469-73. {{PMID|12454640}}
# Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S, Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL, Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J, Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D, Stoeckert CJ Jr, Brazma A. Design and implementation of microarray gene expression markup language (MAGE-ML). Genome Biol. 2002 Aug 23;3(9):RESEARCH0046. {{Entrez Pubmed|12225585}}
# Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S, Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL, Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J, Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D, Stoeckert CJ Jr, Brazma A. Design and implementation of microarray gene expression markup language (MAGE-ML). Genome Biol. 2002 Aug 23;3(9):RESEARCH0046. {{PMID|12225585}}
# Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FC, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet. 2001 Dec;29(4):365-71. {{Entrez Pubmed|11726920}}
# Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FC, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet. 2001 Dec;29(4):365-71. {{PMID|11726920}}

Revision as of 19:53, 22 June 2008

References

Borrowing these references, from this page: [1]. Please check and incorporate into article if relevant.

Database and sharing

  1. Anderle P, Duval M, Draghici S, Kuklin A, Littlejohn TG, Medrano JF, Vilanova D, Roberts MA. Gene expression databases and data mining. Biotechniques. 2003 Mar;Suppl:36-44. PMID 12664683
  2. Sherlock G, Ball CA. Microarray databases: storage and retrieval of microarray data. Methods Mol Biol. 2003;224:235-48. PMID 12710676
  3. Miles MF. Microarrays: lost in a storm of data? Nat Rev Neurosci. 2001 Jun;2(6):441-3. PMID 11389479
  4. Becker KG. The sharing of cDNA microarray data. Nat Rev Neurosci. 2001 Jun;2(6):438-40. PMID 11389478
  5. Geschwind DH. Sharing gene expression data: an array of options. Nat Rev Neurosci. 2001 Jun;2(6):435-8. PMID 11389477
  6. Gardiner-Garden M, Littlejohn TG. A comparison of microarray databases. Brief Bioinform. 2001 May;2(2):143-58. PMID 11465732

Standardization

  1. Stoeckert CJ, Causton HC, Ball CA. Microarray databases: standards and ontologies. Nat Genet. 2002 Dec;32 Suppl 2:469-73. PMID 12454640
  2. Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S, Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL, Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J, Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D, Stoeckert CJ Jr, Brazma A. Design and implementation of microarray gene expression markup language (MAGE-ML). Genome Biol. 2002 Aug 23;3(9):RESEARCH0046. PMID 12225585
  3. Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FC, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet. 2001 Dec;29(4):365-71. PMID 11726920
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