Template:Clade/demo

Template:Clade

Node structure

label1

leaf 1

label2

label A	leaf A

label B	leaf B

leaf 2 is a nested clade structure

label3

leaf 3

sublabel3

|label1=Node structure  |sublabel1=(brackets)
|style1=background-color:#ffdddd;
|1={{Clade
   |label1=label1  
   |1=leaf 1             
   |label2=label2
   |grouplabel2=&nbsp;leaf 2 is a nested clade structure 
   |2={{Clade |style=background-color:#ffaaaa;
      |label1=label A
      |1=leaf A
      |label2=label B
      |2=leaf B
      |bar1=purple |bar2=purple 
      }}
   |label3=label3 |sublabel3=sublabel3
   |3=leaf 3           
   }}

(brackets)

Leaf styling

thicknessN

	1 (default)

	2	line thickness

	3

colorN

	black (default)

	red

	blue

	#00ff00

stateN

	solid (default)

	dotted

	dashed	line styles

	none

	double

|label3=Leaf styling  |sublabel3=(branches)
|style3=background-color:#eeeeee;
|3={{Clade
   |label1=thicknessN
   |1={{Clade
      |1=1 (default) |thickness1=1 |barbegin1=blue 
      |2=2           |thickness2=2 |bar2=blue |barlabel2=&nbsp;line thickness
      |3=3           |thickness3=3 |barend3=blue 
      }}
   |label2=colorN
   |2={{Clade
      |1=black (default) |color1=black          
      |2=red             |color2=red    
      |3=blue            |color3=blue   
      |4=&nbsp;#00ff00   |color4=#00ff00   
      }}
   |label3=stateN
   |3={{Clade
      |1=solid (default) |state1=solid  |barbegin1=purple 
      |2=dotted          |state2=dotted |bar2=purple 
      |3=dashed          |state3=dashed |bar3=purple |barlabel3=&nbsp;line styles
      |4=none            |state4=none   |bar4=purple
      |5=double          |state5=double |barend5=purple 
      }}
   }}

(branches)

node styling

thickness

	I

	J

	K

color

	A

	B

	C

state

	X

	Y

	Z

|label4=node styling  |sublabel4=(brackets)
|style4=background-color:#ffffee;
|4={{Clade
   |label1=thickness
   |1={{Clade |thickness=3
      |1=I  
      |2=J          
      |3=K             
      }}
   |label2=color
   |2={{Clade |color=red 
      |1=A
      |2=B                
      |3=C             
      }}
   |label3=state
   |3={{Clade |state=dashed
      |1=X 
      |2=Y         
      |3=Z        
   }} }}

(brackets)

newick

string

((lion,jaguar,leopard),((siberian,bengal)tiger,snow leopard))panthera

subtree

panthera

	lion

	jaguar

	leopard

tiger

	siberian

	bengal

snow leopard

expanded Newick string

|label6=newick  
|style6=background-color:#ddffdd;
|6={{Clade
   |label1=string
   |1=((lion,jaguar,leopard),((siberian,bengal)tiger,snow leopard))panthera         
   |label2=subtree 
   |grouplabel2=&nbsp;expanded Newick string    
   |grouplabelstyle2=vertical-align: middle;
   |2={{Clade |style=background-color:#ccffcc;
      |newick1=((lion,jaguar,leopard),((siberian,bengal)tiger,snow leopard))panthera
      |1=Leaf1 (redundant if newick1 set)        
      }}
   }}

paraphyly example

	Geraniales

	Myrtales

clade

	Brassicales

	Malvales

label a paraphyletic group within a clade

|label7=paraphyly example&nbsp; |style7=background-color:#ffeeff;
|7={{Clade
   |1={{Clade
      |1=[[Geraniales]]          
      |2=[[Myrtales]]            
      }}
   |grouplabel2=&nbsp;label a paraphyletic group within a clade   
   |label2=clade
   |style2=background-color:#ffddff;
   |2={{Clade
      |1=[[Crossosomatales]]         |barbegin1=purple
      |2={{Clade
         |1=[[Picramniales]]         |bar1=purple
         |2={{Clade
            |1=[[Sapindales]]        |bar1=purple 
            |2={{Clade
               |1=[[Huerteales]]     |bar1=purple
               |2={{Clade
                  |1=[[Brassicales]] |barend1=purple
                  |2=[[Malvales]]    |style2=background-color:#ff99ff;
   }} }} }} }} }} }}

A cladogram illustrating clade features.